not changed to rocky yet

Swan

SWAN is a third-generation wave model for obtaining realistic estimates of wave parameters in coastal areas, lakes and estuaries from given wind, bottom and current conditions. The model is based on the wave action balance equation with sources and sinks. SWAN allows to use two types of grids (structured and unstructured) and nesting approach. SWAN is not recommended to use in on ocean scales.

Manual can be found here and more about SWAN settings can be found here.

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Quickstart

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1. Load the module

    module load green/all
    module load Swan
   

2. Copy the examples

    cp -r $SWANDIR/../Examples Swan-examples
   

3. Unpack one example

    cd Swan-examples
    tar xf refrac.tar.gz
    cd refrac
   

4. Download the swan.slurm script

    curl https://docs.hpc.taltech.ee/engineering/swan.slurm
   

5. Adjust ntasks, nodes and cpus-per-task submit it:

    sbatch swan.slurm
   

   Contents of the swan.slurm:

   #!/bin/bash
   #SBATCH --partition=green-ib  ### Partition
   #SBATCH --job-name=Swan   ### Job Name           -J
   #SBATCH --time=00:10:00       ### WallTime           -t
   #SBATCH --nodes=1             ### Number of Nodes    -N 
   #SBATCH --ntasks-per-node=2   ### Number of tasks (MPI processes)
   #SBATCH --cpus-per-task=4     ### Number of threads per task (OMP threads)
   #SBATCH --mem-per-cpu=100     ### Min RAM required in MB
   
   #set up enviroment    
   module load green/all
   module load Swan
   
   export OMP_NUM_THREADS=$SLURM_CPUS_PER_TASK        
   MACHINEFILE="machinefile"
   
   # Generate Machinefile for mpi such that hosts are in the same order as if run via srun
   srun -l /bin/hostname | sort -n | awk '{print $2}' > $MACHINEFILE
   
   # do the swan simulation
   swanrun -input a11refr.swn -mpi $SLURM_NTASKS -omp=$SLURM_CPUS_PER_TASK
   
   #rm $MACHINEFILE